Mini circos

http://tools.bat.ina.certh.gr/circoletto/

Jet lag

http://www.jetlagrooster.com/

Working with VCFs in Bioconductor

library(VariantAnnotation) vcf <- readVcf("GHS025_D1EH2ACXX_ATCACG_L001_R1.fastq.gz.dedupe.reorder.rg.recal.realign.snpeff.vcf", "hg19") # reduce the set to those not present in the unaffected, for each family # so not in GHS026, and in GHS025 and GHS027 # so not in GHS031, and in GHS015 and GHS008 # so not in GHS034, and in GHS036 and GHS033

10/1/2013

bin/circos -conf nameofconffile result <- do.call(rbind, (genesymbols))

7/1/2013

Technical replicates and limma: https://stat.ethz.ch/pipermail/bioconductor/2010-March/032535.html https://stat.ethz.ch/pipermail/bioconductor/attachments/20110624/2da3f1ee/attachment.pl

2/01/2013

A hypergeometric test is equivalent to a one-tailed Fisher's Exact test. ---------------------------------------------------